Package: epocakir 1.0.0

Alwin Wang

epocakir: Clinical Coding of Patients with Kidney Disease

Clinical coding and diagnosis of patients with kidney using clinical practice guidelines. The guidelines used are the evidence-based KDIGO guidelines, see <https://kdigo.org/guidelines/> for more information. This package covers acute kidney injury (AKI), anemia, and chronic kidney disease (CKD).

Authors:Alwin Wang [aut, cre], Lisa Toh [aut], Davis Vaughan [ctb], Olivier Roy [ctb], Inaki Ucar [ctb]

epocakir_1.0.0.tar.gz
epocakir_1.0.0.zip(r-4.7-any)epocakir_1.0.0.zip(r-4.6-any)epocakir_1.0.0.zip(r-4.5-any)
epocakir_1.0.0.tgz(r-4.6-any)epocakir_1.0.0.tgz(r-4.5-any)
epocakir_1.0.0.tar.gz(r-4.7-any)epocakir_1.0.0.tar.gz(r-4.6-any)
epocakir_1.0.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
epocakir/json (API)

# Install 'epocakir' in R:

install.packages('epocakir', repos = c('https://alwinw.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/alwinw/epocakir/issues

Pkgdown/docs site:https://alwinw.github.io

Datasets:

aki_pt_data - AKI Patient Data
anemia_pt_data - Anemia Patient Data
clinical_obvs - Clinical Patient Data
eGFR_pt_data - EGFR Patient Data

On CRAN:

kdigo kdigo-guidelines kidney-disease medical

5.19 score 7 stars 11 scripts 286 downloads 26 exports 24 dependencies

Last updated from:45377a58e1. Checks:9 OK. Indexed: yes.

Target	Result	Time
linux-devel	OK	144
source / vignettes	OK	180
linux-release	OK	135
macos-release	OK	146
macos-oldrel	OK	192
windows-devel	OK	88
windows-release	OK	74
windows-oldrel	OK	80
wasm-release	OK	116

Exports:.data %>%aki_bCr aki_SCr aki_stages aki_staging aki_UO Albuminuria_stages Albuminuria_staging_ACR Albuminuria_staging_AER anemia as_metric binary2factor combine_date_time_cols combn_changes conversion_factors dob2age eGFR eGFR_adult_SCr eGFR_adult_SCr_SCysC eGFR_adult_SCysC eGFR_child_SCr eGFR_child_SCr_BUN eGFR_child_SCysC GFR_stages GFR_staging

Dependencies:cli cpp11 dplyr generics glue lifecycle lubridate magrittr pillar pkgconfig purrr R6 Rcpp rlang stringi stringr tibble tidyr tidyselect timechange units utf8 vctrs withr

Introduction to epocakir

Rendered fromepocakir.Rmdusingknitr::rmarkdown

Last update: 2021-06-06
Started: 2021-06-06

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
AKI Staging based on Baseline Serum Creatinine	aki_bCr aki_bCr.data.frame aki_bCr.numeric aki_bCr.units
AKI Patient Data	aki_pt_data
AKI Staging based on Changes in Serum Creatinine	aki_SCr aki_SCr.data.frame aki_SCr.numeric aki_SCr.units
AKI Stages	aki_stages
Codify AKI from Serum Creatinine and/or Urine Output	aki_staging aki_staging.data.frame aki_staging.numeric aki_staging.units
AKI Staging based on Urine Output	aki_UO aki_UO.data.frame aki_UO.numeric aki_UO.units
Albuminuria Stages	Albuminuria_stages
Albuminuria Staging based on ACR	Albuminuria_staging_ACR Albuminuria_staging_ACR.data.frame Albuminuria_staging_ACR.numeric Albuminuria_staging_ACR.units
Albuminuria Staging based on AER	Albuminuria_staging_AER Albuminuria_staging_AER.data.frame Albuminuria_staging_AER.numeric Albuminuria_staging_AER.units
Diagnosis of anemia from Hb concentration	anemia anemia.data.frame anemia.numeric anemia.units
Anemia Patient Data	anemia_pt_data
Convert a measured value to metric units	as_metric
Convert binary data to factors based on column name	binary2factor
Clinical Patient Data	clinical_obvs
Combine date and time columns into a single DateTime column	combine_date_time_cols
Combinatorics changes	combn_changes combn_changes.data.frame combn_changes.POSIXct
Conversion Factors	conversion_factors
Calculate age from DOB	dob2age
GFR Estimation	eGFR eGFR.data.frame eGFR.numeric eGFR.units
eGFR 2009 CKD-EPI creatinine equation	eGFR_adult_SCr eGFR_adult_SCr.data.frame eGFR_adult_SCr.numeric eGFR_adult_SCr.units
eGFR 2012 CKD-EPI creatinine-cystatin C equation	eGFR_adult_SCr_SCysC eGFR_adult_SCr_SCysC.data.frame eGFR_adult_SCr_SCysC.numeric eGFR_adult_SCr_SCysC.units
eGFR 2012 CKD-EPI cystatin C equation	eGFR_adult_SCysC eGFR_adult_SCysC.data.frame eGFR_adult_SCysC.numeric eGFR_adult_SCysC.units
eGFR Pediatric SCr and Height	eGFR_child_SCr eGFR_child_SCr.data.frame eGFR_child_SCr.numeric eGFR_child_SCr.units
eGFR Pediatric SCr, Height and BUN	eGFR_child_SCr_BUN eGFR_child_SCr_BUN.data.frame eGFR_child_SCr_BUN.numeric eGFR_child_SCr_BUN.units
eGFR Pediatric SCysC	eGFR_child_SCysC eGFR_child_SCysC.data.frame eGFR_child_SCysC.numeric eGFR_child_SCysC.units
eGFR Patient Data	eGFR_pt_data
GFR Stages	GFR_stages
GFR Staging	GFR_staging GFR_staging.data.frame GFR_staging.numeric GFR_staging.units