Package: epocakir 0.9.9

Alwin Wang

epocakir: Clinical Coding of Patients with Kidney Disease

Clinical coding and diagnosis of patients with kidney using clinical practice guidelines. The guidelines used are the evidence-based KDIGO guidelines, see <https://kdigo.org/guidelines/> for more information. This package covers acute kidney injury (AKI), anemia, and chronic kidney disease (CKD).

Authors:Alwin Wang [aut, cre], Lisa Toh [aut], Davis Vaughan [ctb]

epocakir_0.9.9.tar.gz
epocakir_0.9.9.zip(r-4.5)epocakir_0.9.9.zip(r-4.4)epocakir_0.9.9.zip(r-4.3)
epocakir_0.9.9.tgz(r-4.4-any)epocakir_0.9.9.tgz(r-4.3-any)
epocakir_0.9.9.tar.gz(r-4.5-noble)epocakir_0.9.9.tar.gz(r-4.4-noble)
epocakir_0.9.9.tgz(r-4.4-emscripten)epocakir_0.9.9.tgz(r-4.3-emscripten)
epocakir.pdf |epocakir.html✨
epocakir/json (API)
NEWS

# Install 'epocakir' in R:

install.packages('epocakir', repos = c('https://alwinw.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/alwinw/epocakir/issues

Datasets:

aki_pt_data - AKI Patient Data
anemia_pt_data - Anemia Patient Data
clinical_obvs - Clinical Patient Data
eGFR_pt_data - EGFR Patient Data

On CRAN:

kdigo kdigo-guidelines kidney-disease medical

26 exports 5 stars 1.47 score 26 dependencies 5 scripts 265 downloads

Last updated 7 months agofrom:2cd74293da. Checks:OK: 7. Indexed: yes.

Target	Result	Date
Doc / Vignettes	OK	Sep 18 2024
R-4.5-win	OK	Sep 18 2024
R-4.5-linux	OK	Sep 18 2024
R-4.4-win	OK	Sep 18 2024
R-4.4-mac	OK	Sep 18 2024
R-4.3-win	OK	Sep 18 2024
R-4.3-mac	OK	Sep 18 2024

Exports:.data %>%aki_bCr aki_SCr aki_stages aki_staging aki_UO Albuminuria_stages Albuminuria_staging_ACR Albuminuria_staging_AER anemia as_metric binary2factor combine_date_time_cols combn_changes conversion_factors dob2age eGFR eGFR_adult_SCr eGFR_adult_SCr_SCysC eGFR_adult_SCysC eGFR_child_SCr eGFR_child_SCr_BUN eGFR_child_SCysC GFR_stages GFR_staging

Dependencies:cli cpp11 dplyr ellipsis fansi generics glue lifecycle lubridate magrittr pillar pkgconfig purrr R6 Rcpp rlang stringi stringr tibble tidyr tidyselect timechange units utf8 vctrs withr

Introduction to epocakir

Rendered fromepocakir.Rmdusingknitr::rmarkdownon Sep 18 2024.

Last update: 2021-06-06
Started: 2021-06-06

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
AKI Staging based on Baseline Serum Creatinine	aki_bCr aki_bCr.data.frame aki_bCr.numeric aki_bCr.units
AKI Patient Data	aki_pt_data
AKI Staging based on Changes in Serum Creatinine	aki_SCr aki_SCr.data.frame aki_SCr.numeric aki_SCr.units
AKI Stages	aki_stages
Codify AKI from Serum Creatinine and/or Urine Output	aki_staging aki_staging.data.frame aki_staging.numeric aki_staging.units
AKI Staging based on Urine Output	aki_UO aki_UO.data.frame aki_UO.numeric aki_UO.units
Albuminuria Stages	Albuminuria_stages
Albuminuria Staging based on ACR	Albuminuria_staging_ACR Albuminuria_staging_ACR.data.frame Albuminuria_staging_ACR.numeric Albuminuria_staging_ACR.units
Albuminuria Staging based on AER	Albuminuria_staging_AER Albuminuria_staging_AER.data.frame Albuminuria_staging_AER.numeric Albuminuria_staging_AER.units
Diagnosis of anemia from Hb concentration	anemia anemia.data.frame anemia.numeric anemia.units
Anemia Patient Data	anemia_pt_data
Convert a measured value to metric units	as_metric
Convert binary data to factors based on column name	binary2factor
Clinical Patient Data	clinical_obvs
Combine date and time columns into a single DateTime column	combine_date_time_cols
Combinatorics changes	combn_changes combn_changes.data.frame combn_changes.POSIXct
Conversion Factors	conversion_factors
Calculate age from DOB	dob2age
GFR Estimation	eGFR eGFR.data.frame eGFR.numeric eGFR.units
eGFR 2009 CKD-EPI creatinine equation	eGFR_adult_SCr eGFR_adult_SCr.data.frame eGFR_adult_SCr.numeric eGFR_adult_SCr.units
eGFR 2012 CKD-EPI creatinine-cystatin C equation	eGFR_adult_SCr_SCysC eGFR_adult_SCr_SCysC.data.frame eGFR_adult_SCr_SCysC.numeric eGFR_adult_SCr_SCysC.units
eGFR 2012 CKD-EPI cystatin C equation	eGFR_adult_SCysC eGFR_adult_SCysC.data.frame eGFR_adult_SCysC.numeric eGFR_adult_SCysC.units
eGFR Pediatric SCr and Height	eGFR_child_SCr eGFR_child_SCr.data.frame eGFR_child_SCr.numeric eGFR_child_SCr.units
eGFR Pediatric SCr, Height and BUN	eGFR_child_SCr_BUN eGFR_child_SCr_BUN.data.frame eGFR_child_SCr_BUN.numeric eGFR_child_SCr_BUN.units
eGFR Pediatric SCysC	eGFR_child_SCysC eGFR_child_SCysC.data.frame eGFR_child_SCysC.numeric eGFR_child_SCysC.units
eGFR Patient Data	eGFR_pt_data
GFR Stages	GFR_stages
GFR Staging	GFR_staging GFR_staging.data.frame GFR_staging.numeric GFR_staging.units