{
  "_id": "6a1d77131d7bb097a0a51d74",
  "Package": "epocakir",
  "Title": "Clinical Coding of Patients with Kidney Disease",
  "Version": "1.0.0",
  "Authors@R": "c(person(given = \"Alwin\",\nfamily = \"Wang\",\nrole = c(\"aut\", \"cre\"),\nemail = \"alwin.wang@austin.org.au\",\ncomment = c(ORCID = \"0000-0003-4883-2917\")),\nperson(given = \"Lisa\",\nfamily = \"Toh\",\nrole = \"aut\",\nemail = \"lisa.toh2@austin.org.au\",\ncomment = c(ORCID = \"0000-0002-5994-3666\")),\nperson(given = \"Davis\",\nfamily = \"Vaughan\",\nrole = \"ctb\",\nemail = \"davis@rstudio.com\"),\nperson(given = \"Olivier\",\nfamily = \"Roy\",\nrole = \"ctb\"),\nperson(given = \"Inaki\",\nfamily = \"Ucar\",\nrole = \"ctb\"))",
  "Description": "Clinical coding and diagnosis of patients with kidney\nusing clinical practice guidelines. The guidelines used are the\nevidence-based KDIGO guidelines, see\n<https://kdigo.org/guidelines/> for more information. This\npackage covers acute kidney injury (AKI), anemia, and chronic\nkidney disease (CKD).",
  "License": "MIT + file LICENSE",
  "URL": "https://github.com/alwinw/epocakir,\nhttps://alwinw.github.io/epocakir/",
  "BugReports": "https://github.com/alwinw/epocakir/issues",
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  "Repository": "https://alwinw.r-universe.dev",
  "Date/Publication": "2025-11-02 23:32:33 UTC",
  "RemoteUrl": "https://github.com/alwinw/epocakir",
  "RemoteRef": "HEAD",
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  "NeedsCompilation": "no",
  "Packaged": {
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    "User": "root"
  },
  "Author": "Alwin Wang [aut, cre] (ORCID: <https://orcid.org/0000-0003-4883-2917>),\nLisa Toh [aut] (ORCID: <https://orcid.org/0000-0002-5994-3666>),\nDavis Vaughan [ctb],\nOlivier Roy [ctb],\nInaki Ucar [ctb]",
  "Maintainer": "Alwin Wang <alwin.wang@austin.org.au>",
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  "_user": "alwinw",
  "_type": "src",
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  "_created": "2026-06-01T12:08:42.000Z",
  "_published": "2026-06-01T12:12:03.558Z",
  "_distro": "noble",
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      "name": "v1.0.0",
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  },
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  "_assets": [
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    "extra/citation.json",
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  "_homeurl": "https://github.com/alwinw/epocakir",
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      "date": "2023-01-06"
    },
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      "version": "1.0.0",
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    }
  ],
  "_exports": [
    ".data",
    "%>%",
    "aki_bCr",
    "aki_SCr",
    "aki_stages",
    "aki_staging",
    "aki_UO",
    "Albuminuria_stages",
    "Albuminuria_staging_ACR",
    "Albuminuria_staging_AER",
    "anemia",
    "as_metric",
    "binary2factor",
    "combine_date_time_cols",
    "combn_changes",
    "conversion_factors",
    "dob2age",
    "eGFR",
    "eGFR_adult_SCr",
    "eGFR_adult_SCr_SCysC",
    "eGFR_adult_SCysC",
    "eGFR_child_SCr",
    "eGFR_child_SCr_BUN",
    "eGFR_child_SCysC",
    "GFR_stages",
    "GFR_staging"
  ],
  "_datasets": [
    {
      "name": "aki_pt_data",
      "title": "AKI Patient Data",
      "object": "aki_pt_data",
      "class": [
        "tbl_df",
        "tbl",
        "data.frame"
      ],
      "fields": [
        "SCr_",
        "bCr_",
        "pt_id_",
        "dttm_",
        "UO_",
        "aki_staging_type",
        "aki_"
      ],
      "rows": 27,
      "table": true,
      "tojson": false
    },
    {
      "name": "anemia_pt_data",
      "title": "Anemia Patient Data",
      "object": "anemia_pt_data",
      "class": [
        "tbl_df",
        "tbl",
        "data.frame"
      ],
      "fields": [
        "Hb",
        "age",
        "male"
      ],
      "rows": 10,
      "table": true,
      "tojson": false
    },
    {
      "name": "clinical_obvs",
      "title": "Clinical Patient Data",
      "object": "clinical_obvs",
      "class": [
        "tbl_df",
        "tbl",
        "data.frame"
      ],
      "fields": [
        "Patient Number",
        "Admission Date",
        "Admission Time",
        "Discharge_date",
        "Discharge_time",
        "Date of Birth",
        "Male",
        "Height",
        "Surgery"
      ],
      "rows": 3,
      "table": true,
      "tojson": true
    },
    {
      "name": "eGFR_pt_data",
      "title": "eGFR Patient Data",
      "object": "eGFR_pt_data",
      "class": [
        "tbl_df",
        "tbl",
        "data.frame"
      ],
      "fields": [
        "SCr_",
        "SCysC_",
        "Age_",
        "male_",
        "black_",
        "height_",
        "BUN_",
        "eGFR_calc_type_",
        "eGFR_",
        "pediatric_"
      ],
      "rows": 51,
      "table": true,
      "tojson": false
    }
  ],
  "_help": [
    {
      "page": "aki_bCr",
      "title": "AKI Staging based on Baseline Serum Creatinine",
      "topics": [
        "aki_bCr",
        "aki_bCr.data.frame",
        "aki_bCr.numeric",
        "aki_bCr.units"
      ]
    },
    {
      "page": "aki_pt_data",
      "title": "AKI Patient Data",
      "topics": [
        "aki_pt_data"
      ]
    },
    {
      "page": "aki_SCr",
      "title": "AKI Staging based on Changes in Serum Creatinine",
      "topics": [
        "aki_SCr",
        "aki_SCr.data.frame",
        "aki_SCr.numeric",
        "aki_SCr.units"
      ]
    },
    {
      "page": "aki_stages",
      "title": "AKI Stages",
      "topics": [
        "aki_stages"
      ]
    },
    {
      "page": "aki_staging",
      "title": "Codify AKI from Serum Creatinine and/or Urine Output",
      "topics": [
        "aki_staging",
        "aki_staging.data.frame",
        "aki_staging.numeric",
        "aki_staging.units"
      ]
    },
    {
      "page": "aki_UO",
      "title": "AKI Staging based on Urine Output",
      "topics": [
        "aki_UO",
        "aki_UO.data.frame",
        "aki_UO.numeric",
        "aki_UO.units"
      ]
    },
    {
      "page": "Albuminuria_stages",
      "title": "Albuminuria Stages",
      "topics": [
        "Albuminuria_stages"
      ]
    },
    {
      "page": "Albuminuria_staging_ACR",
      "title": "Albuminuria Staging based on ACR",
      "topics": [
        "Albuminuria_staging_ACR",
        "Albuminuria_staging_ACR.data.frame",
        "Albuminuria_staging_ACR.numeric",
        "Albuminuria_staging_ACR.units"
      ]
    },
    {
      "page": "Albuminuria_staging_AER",
      "title": "Albuminuria Staging based on AER",
      "topics": [
        "Albuminuria_staging_AER",
        "Albuminuria_staging_AER.data.frame",
        "Albuminuria_staging_AER.numeric",
        "Albuminuria_staging_AER.units"
      ]
    },
    {
      "page": "anemia",
      "title": "Diagnosis of anemia from Hb concentration",
      "topics": [
        "anemia",
        "anemia.data.frame",
        "anemia.numeric",
        "anemia.units"
      ]
    },
    {
      "page": "anemia_pt_data",
      "title": "Anemia Patient Data",
      "topics": [
        "anemia_pt_data"
      ]
    },
    {
      "page": "as_metric",
      "title": "Convert a measured value to metric units",
      "topics": [
        "as_metric"
      ]
    },
    {
      "page": "binary2factor",
      "title": "Convert binary data to factors based on column name",
      "topics": [
        "binary2factor"
      ]
    },
    {
      "page": "clinical_obvs",
      "title": "Clinical Patient Data",
      "topics": [
        "clinical_obvs"
      ]
    },
    {
      "page": "combine_date_time_cols",
      "title": "Combine date and time columns into a single DateTime column",
      "topics": [
        "combine_date_time_cols"
      ]
    },
    {
      "page": "combn_changes",
      "title": "Combinatorics changes",
      "topics": [
        "combn_changes",
        "combn_changes.data.frame",
        "combn_changes.POSIXct"
      ]
    },
    {
      "page": "conversion_factors",
      "title": "Conversion Factors",
      "topics": [
        "conversion_factors"
      ]
    },
    {
      "page": "dob2age",
      "title": "Calculate age from DOB",
      "topics": [
        "dob2age"
      ]
    },
    {
      "page": "eGFR",
      "title": "GFR Estimation",
      "topics": [
        "eGFR",
        "eGFR.data.frame",
        "eGFR.numeric",
        "eGFR.units"
      ]
    },
    {
      "page": "eGFR_adult_SCr",
      "title": "eGFR 2009 CKD-EPI creatinine equation",
      "topics": [
        "eGFR_adult_SCr",
        "eGFR_adult_SCr.data.frame",
        "eGFR_adult_SCr.numeric",
        "eGFR_adult_SCr.units"
      ]
    },
    {
      "page": "eGFR_adult_SCr_SCysC",
      "title": "eGFR 2012 CKD-EPI creatinine-cystatin C equation",
      "topics": [
        "eGFR_adult_SCr_SCysC",
        "eGFR_adult_SCr_SCysC.data.frame",
        "eGFR_adult_SCr_SCysC.numeric",
        "eGFR_adult_SCr_SCysC.units"
      ]
    },
    {
      "page": "eGFR_adult_SCysC",
      "title": "eGFR 2012 CKD-EPI cystatin C equation",
      "topics": [
        "eGFR_adult_SCysC",
        "eGFR_adult_SCysC.data.frame",
        "eGFR_adult_SCysC.numeric",
        "eGFR_adult_SCysC.units"
      ]
    },
    {
      "page": "eGFR_child_SCr",
      "title": "eGFR Pediatric SCr and Height",
      "topics": [
        "eGFR_child_SCr",
        "eGFR_child_SCr.data.frame",
        "eGFR_child_SCr.numeric",
        "eGFR_child_SCr.units"
      ]
    },
    {
      "page": "eGFR_child_SCr_BUN",
      "title": "eGFR Pediatric SCr, Height and BUN",
      "topics": [
        "eGFR_child_SCr_BUN",
        "eGFR_child_SCr_BUN.data.frame",
        "eGFR_child_SCr_BUN.numeric",
        "eGFR_child_SCr_BUN.units"
      ]
    },
    {
      "page": "eGFR_child_SCysC",
      "title": "eGFR Pediatric SCysC",
      "topics": [
        "eGFR_child_SCysC",
        "eGFR_child_SCysC.data.frame",
        "eGFR_child_SCysC.numeric",
        "eGFR_child_SCysC.units"
      ]
    },
    {
      "page": "eGFR_pt_data",
      "title": "eGFR Patient Data",
      "topics": [
        "eGFR_pt_data"
      ]
    },
    {
      "page": "GFR_stages",
      "title": "GFR Stages",
      "topics": [
        "GFR_stages"
      ]
    },
    {
      "page": "GFR_staging",
      "title": "GFR Staging",
      "topics": [
        "GFR_staging",
        "GFR_staging.data.frame",
        "GFR_staging.numeric",
        "GFR_staging.units"
      ]
    }
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  "_readme": "https://github.com/alwinw/epocakir/raw/HEAD/README.md",
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        "Features",
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